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Jurisica
World Community Grid Admin, Mapping Cancer Markers and Help Conquer Cancer Scientist
Joined: Feb 28, 2007
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Welcome to Mapping Cancer Markers

Dear World Community Grid volunteers,

We're excited to introduce you to our new project, Mapping Cancer Markers.

Most cancers lack effective markers to detect disease early, to identify high risk patients (prognostic signatures), and to predict optimal treatment strategy (predictive signatures). The main challenge is learning from and using the enormous amounts of complex, molecular data from tumor samples. Many methods have been introduced to generate prognostic and predictive signatures from these data, but we lack systematic approaches to find all useful signatures, and to select the best one.

Counter intuitively, good signatures comprise not only the most 
differential markers. Identifying these less differential markers - "the best supporting actors" - calls for novel, integrative approaches as current statistical and machine learning methods fail in this task.

The Mapping Cancer Markers (MCM; http://www.cs.utoronto.ca/~juris/MCM.htm
project aims to comprehensively and systematically discover clinically 
useful markers to help:

1. Detect cancer early,
2. Identify high-risk patients, and
3. Predict treatment response.

To power this research, we rely on World Community Grid volunteers who 
donate their computers' spare capacity to carry out this extensive 
analysis. Finding all clinically useful markers would require processing thousands of patient samples and testing an astronomical number of marker combinations, which is not feasible even on World Community Grid.

We developed approaches called heuristics to reduce the search space, 
enabling us to tackle this challenge. However, the success of MCM project is only enabled by World Community Grid with the computing resources donated by volunteers around the world.

Considering the diversity of analyses and data, we will have large 
variation in runtimes and work unit duration. We will keep you updated on the progress and discoveries, and would be happy to answer any questions you may have about the project.

We hope you will find our project interesting, and support its goals. With your participation, we will form the largest "cancer research team" in the world.
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[Edit 1 times, last edit by Jurisica at Nov 8, 2013 4:41:17 PM]
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Former Member
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Re: Welcome to Mapping Cancer Markers

I cant wait for your project to start, & good luck with it!
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sartaonline
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Re: Welcome to Mapping Cancer Markers

Just saw this and am excited to start helping with this disease!

I noticed also that while I have the box checked to auto add new projects that it did not add this project, so I manually checked it.
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Former Member
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Re: Welcome to Mapping Cancer Markers

Just got my 1st work units & have this project running on 2 machines now!
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Thargor
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Re: Welcome to Mapping Cancer Markers

Have just updated all of my profiles to run solely this project (with overflow set to grab anything else if nothing else is available). Running a 2-day work-cache, it may take a while to get started, but my server-farm will get started on it soon enough! smile
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rilian
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Ukraine - we rule!
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Re: Welcome to Mapping Cancer Markers

Great project - i'm in with my mini grid :)
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gb009761
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Scotland
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Re: Welcome to Mapping Cancer Markers

Excellent - a new project to chew on biggrin

Welcome Jurisica - here's hoping that this project exceeds your expectations, both in terms of results you're hoping to get from it, and the speed the data will be arriving in your labs.
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Dataman
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Re: Welcome to Mapping Cancer Markers

Welcome back Jurisica . I look forward to supporting this project.
peace
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knreed
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Re: Welcome to Mapping Cancer Markers

Just saw this and am excited to start helping with this disease!

I noticed also that while I have the box checked to auto add new projects that it did not add this project, so I manually checked it.


We run a script that looks for that setting and then opts people in. However, we don't run that script until we have completed deployment and reviewed everything to ensure that we didn't make a mistake somewhere. We are about an hour away from running that script.
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OldChap
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Re: Welcome to Mapping Cancer Markers

Is the 3 day deadline intentional?

EDIT NVM, saw other thread
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[Edit 1 times, last edit by OldChap at Nov 8, 2013 5:21:29 PM]
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